Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E04
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         31   1.2  
11_01_0359 - 2731522-2732346                                           29   3.7  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    28   8.6  
04_01_0601 + 7918220-7918559,7919082-7919158                           28   8.6  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/118 (21%), Positives = 31/118 (26%), Gaps = 1/118 (0%)
 Frame = +1

Query: 529 PXXPXPRPTNPXKGRPXXPXTIGSPPXNQHPKNRSXXXDXAKTRKATXXXXXXXXXXXXX 708
           P  P P PT P   +P        PP    P +          R                
Sbjct: 188 PSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPP 247

Query: 709 PLPGASP-RFXXXXXXXXXXXXXAPSXPXPRNXXXPFXXTLPXGKXXPXSXGHPPPPP 879
           P P  +P +              +P  P P +   P   T P           PPPPP
Sbjct: 248 PPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPP 305


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 775 APSXPXPRNXXXPFXXTLPXGKXXPXSXGHPPPPP 879
           A   P   N    F    P     P S  HPPPPP
Sbjct: 22  AAPPPAATNGTAAFAVAYPYPAPPPHSHSHPPPPP 56


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 478 NTAXPPNQGDNXGKNXSPXXPXPRPTNP 561
           N+  PP QG    ++  P  P P P NP
Sbjct: 242 NSPPPPGQGPVLPRDAPPMPPPPSPPNP 269


>04_01_0601 + 7918220-7918559,7919082-7919158
          Length = 138

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 879 GGGGGVAXRXWXXLTGGEGXXERXXXVSR 793
           GGGGG     W  + GG+    R   +SR
Sbjct: 110 GGGGGAMGARWRAMGGGDDGGRRRGVISR 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,113,124
Number of Sequences: 37544
Number of extensions: 231508
Number of successful extensions: 1312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)