Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E04
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical...    29   3.3  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen pro...    28   7.7  
AC024817-47|AAP82632.1|  177|Caenorhabditis elegans Hypothetical...    28   7.7  
AC024817-46|AAF59573.2|  289|Caenorhabditis elegans Hypothetical...    28   7.7  

>AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical
           protein Y47D7A.11 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 764 YPXXPLXXPSRETXXXLSSXPSPPVSXXQXRXATPPPP 877
           YP  P   P+ +      + PSPP    +   + PPPP
Sbjct: 32  YPTPPPSYPTPKKYPVAPTYPSPPAYAQKPSYSAPPPP 69


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 31/131 (23%), Positives = 38/131 (29%), Gaps = 2/131 (1%)
 Frame = +1

Query: 493 PNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHPKNRSXXXDXAKTRKATX 672
           PN GD    N     P PR  +P  G+P       +PP     K +    D AK +  T 
Sbjct: 89  PNAGDTTKPNSQSGDPKPRGGDP-AGKP-------NPPAGDPSKTKPQGGDPAKPKPQTG 140

Query: 673 XXXXXXXXXXXXPLPGASPRFXXXXXXXXXXXXXAPSXPXPRNXXXPFXXT--LPXGKXX 846
                         P  +P               AP  P  +    P       P  K  
Sbjct: 141 DPYATNSTVKPATAP-VTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAP 199

Query: 847 PXSXGHPPPPP 879
           P      PPPP
Sbjct: 200 PPPTTKAPPPP 210


>Z74042-8|CAA98525.1|  299|Caenorhabditis elegans Hypothetical
           protein T11F9.9 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHP 621
           PP Q    G +  P  P P+  N   G+P      G+P  +  P
Sbjct: 229 PPGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSGTP 272


>Z74036-2|CAA98487.1|  266|Caenorhabditis elegans Hypothetical
           protein F55C10.3 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHP 621
           PP Q    G +  P  P P+  N   G+P      G+P  +  P
Sbjct: 196 PPGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSGTP 239


>Z74036-1|CAA98486.1|  299|Caenorhabditis elegans Hypothetical
           protein F55C10.2 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHP 621
           PP Q    G +  P  P P+  N   G+P      G+P  +  P
Sbjct: 229 PPGQPGQPGHDGQPGAPGPKGPNGNPGQPGADGNPGAPGQSGTP 272


>AC084197-24|AAM44390.1|  297|Caenorhabditis elegans Collagen
           protein 112 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSP 603
           PP Q    G+N  P  P P+   P  G+P  P + G+P
Sbjct: 227 PPGQPGTPGQNGQPGQPGPK--GP-SGQPGQPGSDGNP 261


>AC024817-47|AAP82632.1|  177|Caenorhabditis elegans Hypothetical
           protein Y54G2A.24b protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 597 LPPPEPASQKSKXXPXXGXNPKS 665
           LPPP PA+ K+K  P    NP +
Sbjct: 139 LPPPLPATAKAKTAPAIANNPNA 161


>AC024817-46|AAF59573.2|  289|Caenorhabditis elegans Hypothetical
           protein Y54G2A.24a protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 597 LPPPEPASQKSKXXPXXGXNPKS 665
           LPPP PA+ K+K  P    NP +
Sbjct: 251 LPPPLPATAKAKTAPAIANNPNA 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,421
Number of Sequences: 27780
Number of extensions: 154572
Number of successful extensions: 546
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)