Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E04
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    31   1.0  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   7.2  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    28   7.2  

>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +1

Query: 472 RXNTAXPPNQGDNX-GKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQH 618
           R  T  PPN        +  P  P PRP  P    P        PP NQH
Sbjct: 68  RFTTPPPPNLAQPLRSSSRQPPPPPPRPQTPPTFVPEETQPQTPPPPNQH 117


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHP 621
           PP+   + G   SP  P P    P    P  P T  SP  N  P
Sbjct: 536 PPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPP 579


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +1

Query: 490 PPNQGDNXGKNXSPXXPXPRPTNPXKGRPXXPXTIGSPPXNQHPKNRS 633
           PP+   N   N +P    P P       P  P +  +P  N +P   S
Sbjct: 111 PPDSSSNPNSNPNPPVTVPNPPE-SSSNPNPPDSSSNPNSNPNPPESS 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,068
Number of Sequences: 28952
Number of extensions: 148393
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)