Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E03
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   7.5  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   10.0 
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    28   10.0 

>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 83  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 259
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 624 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 682

Query: 260 SGSSYSRHRASKIIRKVDFI 319
             +  +  +A K  +  + +
Sbjct: 683 EEARKAAEKAEKAQKMTEML 702


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +2

Query: 83  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 259
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 622 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 680

Query: 260 SGSSYSRHRASKIIRKVDFI 319
             +  +  +A K  +  + +
Sbjct: 681 EEARKAAEKAEKAQKMTEML 700


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 293 CLPYDGYSWTRFD*SIANVASHF 225
           C P D  SWT FD  I N  S++
Sbjct: 330 CSPNDNESWTLFDEMIGNAESYY 352


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 582 NYKSPTNKSYIFXXPPPPXPXXXXXKSP 665
           NY +P N+ +    PPPP P      +P
Sbjct: 597 NYGTPENRPHAVPPPPPPPPPQSFGMAP 624


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 582 NYKSPTNKSYIFXXPPPPXPXXXXXKSP 665
           NY +P N+ +    PPPP P      +P
Sbjct: 423 NYGTPENRPHAVPPPPPPPPPQSFGMAP 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,991
Number of Sequences: 27780
Number of extensions: 315361
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)