Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E03
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26240.1 68414.m03201 proline-rich extensin-like family prote...    31   1.3  
At1g54215.1 68414.m06180 proline-rich family protein contains pr...    30   1.7  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    30   2.3  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    30   2.3  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    28   9.3  

>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
           similar to hydroxyproline-rich glycoprotein precursor
           gi|727264|gb|AAA87902; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 478

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 585 YKSPTNKSYIFXXPPPPXPXXXXXKSPRGP 674
           YKSP+   Y++  PPPP        SP  P
Sbjct: 447 YKSPSPPPYVYKSPPPPPSYSYSYSSPPPP 476


>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 626 PPPXPXXXPX*KSPGAXGSPL*XGVNLXPTPAXXYXRPSLXPPPXLXXP 772
           PPP P   P    P A    +  G+   P P     +P   PPP    P
Sbjct: 50  PPPPPPPPPPPPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQPPP 98


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +3

Query: 585 YKSPTNKSYIFXXPPPPX--PXXXXXKSPRGPXDXPFXEXLTXIPHLHXXTXDRVXAPPP 758
           Y +PTN       PPPP   P       P GP D P+    +  P+ H      +  PPP
Sbjct: 220 YDNPTNDYPADVPPPPPSSYPSNDHLPPPTGPSDSPYPHPYSHQPY-HQDPPKHM--PPP 276


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
 Frame = +2

Query: 629 PPXPXXXPX*KSPGAXGSPL*X-GVNLXPTPAXXYXRPSLXPPPXLXXPXEXKXXXFRXK 805
           PP P   P  KSP     P       + P P      P+  PP     P +     +   
Sbjct: 293 PPTPTYSPPVKSPPVQKPPTPTYSPPIKPPPVQKPPTPTYSPP-IKPPPVKPPTPIYSPP 351

Query: 806 FGGXPFXLNSEPIYNPXXKPP 868
               P      PIY+P  KPP
Sbjct: 352 VKPPPVHKPPTPIYSPPVKPP 372



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
 Frame = +2

Query: 629 PPXPXXXPX*KSPGAXGSPL*X-GVNLXPTPAXXYXRPSLXPPPXLXXPXEXKXXXFRXK 805
           PP P   P  K P     P       + P P      P+  PP  L  P +     +   
Sbjct: 377 PPTPIYSPPVKPPPIQKPPTPTYSPPIKPPPLQKPPTPTYSPPIKLP-PVKPPTPIYSPP 435

Query: 806 FGGXPFXLNSEPIYNPXXKPP 868
               P      PIY+P  KPP
Sbjct: 436 VKPPPVHKPPTPIYSPPVKPP 456



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
 Frame = +2

Query: 629 PPXPXXXPX*KSPGAXGSPL*X-GVNLXPTPAXXYXRPSLXPPPXLXXPXEXKXXXFRXK 805
           PP P   P  K P     P       + P P      P+  PP       +     +   
Sbjct: 191 PPTPIYSPPIKPPPVHKPPTPIYSPPIKPPPVHKPPTPTYSPPVKPPPVHKPPTPIYSPP 250

Query: 806 FGGXPFXLNSEPIYNPXXKPP 868
               P      PIY+P  KPP
Sbjct: 251 IKPPPVHKPPTPIYSPPVKPP 271


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 585 YKSPTNKSYIFXXPPPPXPXXXXXKSPRGP 674
           Y SP    Y++  PPPP P       PR P
Sbjct: 62  YSSPPPPPYVYNSPPPP-PPYIYNSPPRPP 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,061
Number of Sequences: 28952
Number of extensions: 288074
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)