Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E02
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.21 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.65 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 460 SHVLSCVIPLILWITVLPPLSEVIPLAA 377
           S +LS V+ L+L   +LPP S V+PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 VRGGETRQDYKDTXRFPLGSSLVRSPVSDPG 657
           V   ET  ++ DT R P+  SL +SP +D G
Sbjct: 171 VEENETYDEF-DTIRIPIVRSLSKSPPNDEG 200


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 481 GLLLAFCSHVL-SCVIPLILWITVLPPLSEVIPL 383
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 460 SHVLSCVIPLILWITVLPPLSEVIPL 383
           S +LS  +  +L   ++PP S V+PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 326 GALPLPRSLTRCARSFGCGERYHLT 400
           G LPL  S  +  R+ G  ER H+T
Sbjct: 637 GDLPLSISWLKDGRAMGPSERVHVT 661


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 460 SHVLSCVIPLILWITVLPPLSEVIPL 383
           S ++S  +  +L + ++PP S V+PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 460 SHVLSCVIPLILWITVLPPLSEVIPL 383
           S ++S  +  +L + ++PP S V+PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,697
Number of Sequences: 438
Number of extensions: 4991
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)