Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E02
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    33   0.23 
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    30   2.2  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    30   2.2  
At3g08970.1 68416.m01048 DNAJ heat shock N-terminal domain-conta...    29   2.9  
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    29   2.9  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    29   3.8  
At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   5.0  
At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-conta...    29   5.0  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   6.6  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   6.6  

>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 606 AFPPGKLP-RALSCFRPWPLTGYLSAFLPSGSVALSHSSRCXYLTSGVG 749
           +F PGK+  R ++CF P  +  Y+   LP+G   LS SS+  + + G G
Sbjct: 110 SFLPGKVDKRKVACFSPGLMAAYVVVGLPTGMPPLS-SSKSAFASKGAG 157


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 481  GLLLAFCSHVLSCVIPLILWITVLPPLSEVIPL 383
            GL L F S +LS  IPL++ ITV    +EV+ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 481  GLLLAFCSHVLSCVIPLILWITVLPPLSEVIPL 383
            GL L F S +LS  IPL++ ITV    +EV+ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g08970.1 68416.m01048 DNAJ heat shock N-terminal
           domain-containing protein low similarity to
           PIR|A47079|A47079 heat shock protein dnaJ - Lactococcus
           lactis; contains Pfam profile PF00226 DnaJ domain
          Length = 572

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 697 LPEGRKADRYPVSGQGRKQESARGSFPGGNAWYLYSPVG 581
           L +  K   Y + G  + Q      FPGGN  Y YS  G
Sbjct: 78  LSDEEKRKNYDLYGDEKGQPGFDSGFPGGNGGYSYSSSG 116


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -2

Query: 514 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSEVIPLAA 377
           +R++R  FT   +LLA  S +L  VIP IL IT L   S     AA
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 732 DTYSVSYEKAPRFPKGERRTGIR*AARVGN 643
           D Y   Y  A    KGERRT +R  ARVG+
Sbjct: 106 DEYRSKYLGAKMEKKGERRTSLRYEARVGD 135


>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 474 KRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQR 572
           K+P  V+R    +FS+G  PL   +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At1g75310.1 68414.m08748 DNAJ heat shock N-terminal domain-containing
            protein low similarity to SP|Q27974 Auxilin {Bos taurus};
            contains Pfam profile PF00226: DnaJ domain
          Length = 1448

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 711  EKAPRFPKGERRTGIR*AARVGNRRAHEGASQGETXGIFIVLSGFATSDL 562
            E + RFP GE   G   AA  GN + +EG    E+    +   G ATSD+
Sbjct: 1064 ESSCRFPNGEEIIG---AATNGNMKENEGEEGEESCRSSMEEEGDATSDI 1110


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 499 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSEVIPLAAAER 368
           G +T    L  + S  LS  +    W+++LPPL+ ++  + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 326 PIRKPPLPARWPIH*CRKNLPHL 258
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,279
Number of Sequences: 28952
Number of extensions: 326133
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)