Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E01
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.58 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   4.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.5  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 714 PPXXXXXXXPPXXPPXXXPXXXPPPXPPXPXPXPXXPPXPXXXPXPPPP 860
           PP        P   P        P  PP        PP P   P P PP
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +1

Query: 715 PPXXXXXXPPPXPPPXXXXXPXPPXTPPXPXPXPXXPPPPXXXPPPPPP 861
           PP        P   P        P  PP        PP P   P P PP
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +1

Query: 742 PPXPPPXXXXXPXPPXTPPXPXPXPXXPPPPXXXP 846
           P  PP        PP     P P P   PP    P
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 715 PPXXXXXXPPPXPPPXXXXXPXPPXTPPXPXPXP 816
           PP      P    P         P TPP P P P
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = +2

Query: 509 PXRGXPFPPPXXGXPXSPXNPXKPPQKTXXXXXPPXPXPPP 631
           P R    PP          +P    + +     PP P PPP
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 758 GGGXGGGXXXXXXGGGG 708
           GGG GGG       GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 831 GXGXXXGGGGXGGGXGGXXXXG 766
           G      GGG GGG  G    G
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDG 106


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 488 KXPPPPXPXRGXPFPPPXXGXPXSPXNPXKPPQKT 592
           K PPPP P    P   P    P    NP    Q T
Sbjct: 734 KLPPPPHPHHQPP-RNPVGTNPHDINNPLSVNQLT 767


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 488 KXPPPPXPXRGXPFPPPXXGXPXSPXNPXKPPQKT 592
           K PPPP P    P   P    P    NP    Q T
Sbjct: 626 KLPPPPHPHHQPP-RNPVGTNPHDINNPLSVNQLT 659


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +2

Query: 755  PXXXPXXXXPPXPPPXPPPPXXXPXPP 835
            P   P    PP PP    PP      P
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKP 1393


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 754 PPXXXXXPXPPXTPPXPXPXPXXPP 828
           PP     P     PP   P P  PP
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 493 PPPPXPXPXXTFPTXXXXXPXLPP 564
           PPPP P    +F         +PP
Sbjct: 731 PPPPPPPRVESFAETVRTVSKIPP 754


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/49 (26%), Positives = 13/49 (26%)
 Frame = +3

Query: 714 PPXXXXXXXPPXXPPXXXPXXXPPPXPPXPXPXPXXPPXPXXXPXPPPP 860
           PP        P   P        P  PP         P P   P P PP
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,608
Number of Sequences: 336
Number of extensions: 5170
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)