Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D24
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    31   1.6  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   8.6  
05_03_0458 + 14280953-14281866,14281964-14282912                       28   8.6  

>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +2

Query: 764 PSXAPPXXXHXTPLPXXXXFXXPPPSPXTXLPXXTHTTPXP 886
           P+  PP   H  P P       PPP P +  P      P P
Sbjct: 77  PAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPP 117


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = -1

Query: 885 GXGVVWVXXGRXVXGEGGGXXKXXXXGRGVXX*XXGGAXEGXXPSWK 745
           G G  W   G    G GGG       G G      GG      PSW+
Sbjct: 185 GGGGGWTGGGNGGGGSGGGGGARGSSGGGGGGGWAGGGGGQGNPSWR 231


>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 779 PXXXHXTPLPXXXXFXXPPPSPXTXLPXXTHTTPXP 886
           P     +P P       PPP P T L   +H TP P
Sbjct: 58  PSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPTPPP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,631
Number of Sequences: 37544
Number of extensions: 265615
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)