Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D23
         (978 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.3  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   9.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 522 PPXAPAPPPXXAPXSPPP 575
           PP APAPPP  AP    P
Sbjct: 470 PPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +3

Query: 519  PPPXAPAPPPXXAPXSP--PPS 578
            PPP    PPP  AP  P  PPS
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPS 1729



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 519  PPPXAPAPPPXXAPXSPPP 575
            PPP AP P P   P +PPP
Sbjct: 1716 PPPSAP-PMPAGPPSAPPP 1733



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 519  PPPXAPAPPPXXAPXSPPPS 578
            P   AP PPP      PPPS
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPS 1719


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PPPXAPAPPPXXAPXSPP 572
           PPP  PAP P  A  +PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 522 PPXAPAPPPXXAPXSPPPS 578
           PP APAPP   +   PP S
Sbjct: 124 PPSAPAPPTPQSELRPPTS 142


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 519 PPPXAPAPPPXXAPXSPPP 575
           PPP  P PPP  A   PPP
Sbjct: 761 PPP--PPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = +3

Query: 519 PPPXAPAP---PPXXAPXSPPP 575
           PPP  P P   PP   P  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -3

Query: 388 GGGGXGXPRXGGXXXXXXXXXXXGAXGGXXGXGXGPXFXAXGP 260
           GG G   P  GG              GG  G G GP     GP
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 440 PPXXPPPPXPRXRAXLRXPPXP 505
           P   PPPP P+ +   R P  P
Sbjct: 21  PATGPPPPIPKIKIKTREPKGP 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 860,747
Number of Sequences: 5004
Number of extensions: 7993
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)