Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D23
         (978 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 264 PXAXKXGPXPXPXXPPXAXXXXXXXXXXXXPPXRGXPXPPP 386
           P +   GP P P   P A            PP  G P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 519 PPPXAPAPPPXXAPXSPP 572
           PP  +  PPP   P +PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 543 PPXXAPXSPPPS 578
           PP  AP  PPPS
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 437 PPPXXPPPPXP 469
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 525 PXAPAPPPXXAPXSPPPS 578
           P  PAPPP     S P S
Sbjct: 338 PPKPAPPPPPPSSSGPDS 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 357  PXRGXPXPPPP 389
            P  G P PPPP
Sbjct: 1852 PVSGSPEPPPP 1862


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,977
Number of Sequences: 438
Number of extensions: 2453
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)