Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D21
(853 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_36576| Best HMM Match : FerB (HMM E-Value=9) 32 0.68
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1) 32 0.68
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074) 29 6.3
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 28 8.4
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 28 8.4
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 28 8.4
>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 35.1 bits (77), Expect = 0.073
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 259 VLGARGTLSP*YSHSGSWPACRTVRVIGRCVGGGLKVG 146
++ G +S H GSW +CR + ++ C GGGL++G
Sbjct: 109 IMSGCGIMSSPGDHVGSWGSCRVLGIMSGC-GGGLRIG 145
>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
Length = 223
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -3
Query: 305 ELHVVDFRRKNRMVCGTWRTRNIVTLIQP*RFLASLSHCTCYRALCWRWPEGRLDEPLAR 126
ELH+ FRR+NRM R+I++ F +CT Y+ +CW++ E R+ L
Sbjct: 64 ELHM--FRRENRMAGKQLPARDILS------FENKRRNCTVYKCVCWQYSE-RMHSSLIE 114
Query: 125 SLSKEQHQ 102
+S Q
Sbjct: 115 LVSSYLRQ 122
>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
Length = 556
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 435 LRFLYPRGKLXVPTLPPFNPSQY 503
+RF +P L +PTLPP NPSQY
Sbjct: 41 MRF-HPPEPLQIPTLPPANPSQY 62
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 435 LRFLYPRGKLXVPTLPPFNPSQY 503
+RF +P L +PTLPP NPSQY
Sbjct: 258 MRF-HPPEPLQIPTLPPANPSQY 279
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 236 QCSSCAKYRXPSDSSFENXRRAARSKPKVCSQC 334
QCS+C+K S S + R + KP +CS C
Sbjct: 762 QCSTCSKSYSTSRSLVRHERSHSSEKPYLCSDC 794
>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 187 VQCDKLARNRYGCIKVTMFLVRQVPXTIRFFLRKSTTCSSIQT-EGMFAVSPIXKI 351
++CDK+ R+ K TM + R +R + K+ T S++Q F V P I
Sbjct: 674 IKCDKIQTGRFVYPKNTMMIPRHFQVGLRIYAGKNETLSTLQNWNPWFKVFPACDI 729
>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
Length = 643
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 315 RRYVRSVTNPXNNEASIEHSHHTVDIGL 398
R ++++TNP NNE IE +D+GL
Sbjct: 60 RDEIQNLTNPFNNEWHIEKRQPLIDMGL 87
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 28.3 bits (60), Expect = 8.4
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 283 RKSTTCSSIQTEGMFAVSPIXKITRRP--LNIHIIQLILDLTSRSRATVTQGTCGF---- 444
RK++T SS + A P + P L I+ L+L LTS + T++QG+ +
Sbjct: 297 RKASTASSHSSSFRLAKKPQHVCSNPPSCLLHSIVALLLCLTSDGQLTLSQGSANWSSAL 356
Query: 445 --CTLEGNXL 468
C LEG L
Sbjct: 357 QSCRLEGKQL 366
>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 236 QCSSCAKYRXPSDSSFENXRRAARSKPKVCSQCHQSXK 349
QC+ C KY S S + R + KP C +C + K
Sbjct: 6 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 236 QCSSCAKYRXPSDSSFENXRRAARSKPKVCSQCHQSXK 349
QC+ C KY S S + R + KP C +C + K
Sbjct: 62 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99
>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 236 QCSSCAKYRXPSDSSFENXRRAARSKPKVCSQCHQSXK 349
QC+ C KY S S + R + KP C +C + K
Sbjct: 6 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 236 QCSSCAKYRXPSDSSFENXRRAARSKPKVCSQCHQSXK 349
QC+ C KY S S + R + KP C +C + K
Sbjct: 62 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,632,484
Number of Sequences: 59808
Number of extensions: 472226
Number of successful extensions: 1174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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