Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D21
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla...    29   5.2  
At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical ...    28   9.1  

>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 209 LASLSHCTCYRALCWRWPEGRLDEPLARSLSKEQHQN*T 93
           L SL + TCYR   W W E     P  R  + E+  N T
Sbjct: 581 LTSLCYVTCYREALWMWKEVEKAVPGLRIEATEKWFNMT 619


>At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical to
           amino acid permease I GI:22641 from [Arabidopsis
           thaliana]
          Length = 485

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 417 HRNTRDLRFLYPRGKLXVPTLPPFNPSQYILIWET 521
           +RN  D +F+     + VP L  FN S + L+W T
Sbjct: 358 NRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRT 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,627
Number of Sequences: 28952
Number of extensions: 324353
Number of successful extensions: 736
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)