Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D20
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.29
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.2
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 8.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 815 PPPPHXXXGGGXPPPPP 865
PPPP G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 0.67
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 815 PPPPHXXXGGGXPPPPP 865
PPPP G PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 815 PPPPHXXXGGGXPPPPPXXG 874
P PP GG PPPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 815 PPPPHXXXGGGXPPPPP 865
PPPP G PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 766 PPPPPPLXXXXPXKKFPPPP 825
PPPPP + P PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 766 PPPPPPLXXXXPXKKFPPPP 825
PPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 766 PPPPPPLXXXXPXKKFPPPP 825
PPPPPP P + PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 766 PPPPPPLXXXXPXKKFPPPP 825
PPPPPP P + PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 815 PPPPHXXXGGGXPPPPPXXG 874
PPPP PPPPP G
Sbjct: 12 PPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 718 TPPXFXXGFFXXQKXXPPPPPPLXXXXPXKKFPPPP 825
TPP Q P PPPP P PP P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 635 GXPPGXXGGENPXNTPPLW 579
G G GGE+P N P LW
Sbjct: 355 GQEQGFNGGEDPANRPALW 373
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +1
Query: 670 KKXPPXKGPXKXPXKKTPPXFXXGFFXXQKXXPPPPPPLXXXXPXKKFPPPP 825
KK PP P + PP G PPPPPP P PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPI---GNGSSNSSLPPPPPP-PRSNAAGSIPLPP 355
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 757 KXXPPPPPPLXXXXPXKKFPPPP 825
K PPPPPP P PP
Sbjct: 203 KAQPPPPPPQQNYPPAASSSAPP 225
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.2
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 864 GGGGGXPPPXXXXGGGGEFFXRXGXXQ--XXXXXXXPFLXXKKPXXKXGG-XFFXGGFGG 694
GGG G PPP GG F G P P GG F GG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 693 XFXGG 679
F GG
Sbjct: 254 -FGGG 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,382
Number of Sequences: 5004
Number of extensions: 33227
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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