Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D20
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 754  QKXXPPPPPP 783
            Q+  PPPPPP
Sbjct: 1352 QQQPPPPPPP 1361



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 754  QKXXPPPPPP 783
            Q+  PPPPPP
Sbjct: 1353 QQPPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 757 KXXPPPPPP 783
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 803 QKNSPPPPHXXXGGGXPPPPP 865
           Q+ SPP P      G PP  P
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,743
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)