Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D18
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.79 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.79
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +2

Query: 893 PPPXXAPPAPPXNXXPXPP--XPPPXPPXRP 979
           P P  +P AP     P P    PP  PP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 775 PPPPPPXXKXP 807
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 938 PXPPXPPPXPP 970
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 842  PPPPXPPS 865
            PPPP PPS
Sbjct: 1356 PPPPPPPS 1363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 923  PXNXXPXPPXPPP 961
            P +  P PP PPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 945  PXPPPPXPR 971
            P PPPP PR
Sbjct: 1857 PEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,233
Number of Sequences: 438
Number of extensions: 6823
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)