Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D17
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   4.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.2  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +3

Query: 585  GETRQDYKDTRRFPWXLP----RALSCSDPAAYRNTCPP 689
            G T  D      FPW +     + L  ++P  YRN C P
Sbjct: 1941 GRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYRNFCKP 1979


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 EHHKNRRSSQRWRNPTGL*RYQAFPLEXP 637
           ++HKNR+S+     P GL  Y+A  L  P
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,381
Number of Sequences: 5004
Number of extensions: 61035
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)