Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D17
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0857 - 7127681-7127830,7128896-7129414 31 1.6
04_04_0900 + 29232365-29232931 29 5.0
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 29 6.6
10_07_0162 - 13713504-13714754,13716445-13716522 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
01_05_0746 + 24856362-24856710,24856799-24856986 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761... 28 8.7
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 28 8.7
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 616 GVSPGXSLVRSPVPTLPLTGIPVRLSPLREAWRFLIXH 729
GV+ G +L+ P+P +P G+ V L P R WR+ H
Sbjct: 82 GVTRGEALM-FPLPAVPSPGVAVHLRPRRWDWRWRRCH 118
>04_04_0900 + 29232365-29232931
Length = 188
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 719 RKRHASRRGERRTGIPVSGRVGTGERTREXPGETPG 612
R+ R G R +GIP SGR G+G + G G
Sbjct: 109 RQWRRGRGGRRCSGIPASGRSGSGRLGKSMDGRRRG 144
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 28.7 bits (61), Expect = 6.6
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 533 RLRPPDEHHKNRRSSQRWRNPT---GL*RYQAFPLEXPSCALLFRPCRLPEYLSAFLPFG 703
R RP E + SS RWRNPT G+ ++ L +L R+ + A + G
Sbjct: 1333 RHRPLTEGSPHPLSSARWRNPTKMQGMFMHKDLLLRSRKNPILAANLRVQISVQASIIMG 1392
Query: 704 KRGAFSXLTLXVSQ 745
+GA S L Q
Sbjct: 1393 LQGAVSQTALQPGQ 1406
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 643 RSPVPTLPLTGIPVRLSPLREAWRFL--IXHAVXISVRCRSFAPSWAVCTXPPFXPNRCA 816
+S P P G+ VR +PL E+ + + V R F P +C P PN+C
Sbjct: 9 QSAAPPPPGAGVRVR-APLVESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVKPNKCK 67
Query: 817 LSGT 828
G+
Sbjct: 68 SRGS 71
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 348 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 503
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 619 VSPGXSLVRSPVPTLP-LTGIPVRLSPLREAWRFLIXHAVXISVRCRSFAPSWAVCTXPP 795
V+P ++ + T P L G+ VR P AW + + S A WA T P
Sbjct: 75 VTPWTAMHEARSDTWPCLAGVCVRRKPAWVAWVLAVAVVTDDGITGESLARPWAGMTTTP 134
Query: 796 FXPNRCALSGTIVLXSNPGXKXL 864
L G ++ ++P K L
Sbjct: 135 LGVVP-LLGGVVLALTSPSIKNL 156
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 NESAN---ARGEAVCVLGALPLPRSLTRCAR 380
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_02_0348 -
7616686-7616802,7616888-7617176,7617259-7617429,
7617508-7617680,7617789-7618394,7618482-7618793,
7619007-7619032,7619077-7619191
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = +2
Query: 416 KAVIRLS-TESGDNAGKNM*AKGQQKARNRKKX---ALLAFFHRLRPPDEHHKNRRSSQR 583
+A IR T D ++M AK +Q+ R K+ A A L P + H + S++
Sbjct: 77 RASIRAELTSEFDEKLESMRAKIRQEIREEKQNPQAAAAAAHEELGSPTQKHSSCASTEL 136
Query: 584 WRNPTGL*RYQAFPLEXPSCALLFR 658
NPT + +E SC L R
Sbjct: 137 AENPTSVDSAVDHIMEPTSCTLTVR 161
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 627 WXLPRALSCSDPAAYRNTCPPFSPSG 704
W RA SCSDPAA PP S +G
Sbjct: 2 WLATRASSCSDPAA-AGLVPPKSAAG 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,526,740
Number of Sequences: 37544
Number of extensions: 475328
Number of successful extensions: 1402
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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