Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D17
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   3.1  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At3g59830.1 68416.m06676 ankyrin protein kinase, putative simila...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    28   7.2  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    28   7.2  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   7.2  

>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +3

Query: 522 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWXLPRALSCSDPAAYRNTCPPFSPS 701
           R++  + PL  I ++        +R  Y      P+  P A +    A Y NT  P+S S
Sbjct: 291 RYNNANTPLNCINRVSTAPFSPVSRDSYTSFLTLPYPSPTAQT----ATYHNTNNPYSSS 346

Query: 702 GSVALSHXS 728
            S +L+  S
Sbjct: 347 PSFSLNPSS 355


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -3

Query: 590 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 411
           F  S  S+D+         YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 410 ELIPL 396
              PL
Sbjct: 198 GYAPL 202


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 539 RPPDEHHKNRRSSQRW 586
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At3g59830.1 68416.m06676 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 477

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +3

Query: 465 TCEQKASKRPGTVKRX--RCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPW 629
           T   K+   P  +K     CW   I   P+ S  I ++D  V     +  +KDT +FPW
Sbjct: 418 TIRTKSKSYPPELKELIEECWHPEISVRPIFSEIIIRLDKIVTNCSKQGWWKDTFKFPW 476


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTQRR 422
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTQRR 422
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 339 PIRKPPLPARWPIH*CRKNLPHL 271
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 477 KASKRPGTVKRX--RCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPW 629
           K+   P  +K    +CW    G  P  S  I ++D  V     +  +KDT +FPW
Sbjct: 424 KSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKFPW 478


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 477 KASKRPGTVKRX--RCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPW 629
           K+   P  +K    +CW    G  P  S  I ++D  V     +  +KDT +FPW
Sbjct: 424 KSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKFPW 478


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 590 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 414
           F  S  S+D+    Q     YG   A  P YGS P  G+    +   YP + +     P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197

Query: 413 SELIPL 396
           +   PL
Sbjct: 198 TGYAPL 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,172,208
Number of Sequences: 28952
Number of extensions: 347079
Number of successful extensions: 910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)