Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D16
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   7.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   7.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 198 GRDHDRVHEDRRGLYLH 148
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 654 SWYWNCVCASSKKLLKVLRCNH 719
           S Y+ CV   SK +    +CNH
Sbjct: 456 SVYYTCVSDGSKLVSIQRKCNH 477


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 527 KDNSASNGSGDFLAALHTQTNMTVVVANGNK 435
           K NS +NGS D +      ++    + NG+K
Sbjct: 279 KPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,305
Number of Sequences: 336
Number of extensions: 3819
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)