Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D16
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   177   2e-45
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  177 bits (430), Expect = 2e-45
 Identities = 78/105 (74%), Positives = 98/105 (93%)
 Frame = +3

Query: 216 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 395
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 396 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 530
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+G
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMG 131



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 28/80 (35%), Positives = 44/80 (55%)
 Frame = +1

Query: 487 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTG 666
           A++        + + KLS++P+RRGYWG  +G PHTVP +   +          APRG G
Sbjct: 117 AKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAG 176

Query: 667 IVSAPVLRSFSRC*DVTICH 726
           +V+APV + F +   +  C+
Sbjct: 177 LVAAPVTKRFLQLAGIEDCY 196


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 213 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 88
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,872
Number of Sequences: 5004
Number of extensions: 62330
Number of successful extensions: 166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)