Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D16
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      165   6e-41
07_01_0756 + 5819367-5820038,5820847-5821005                          160   2e-39
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     41   0.002
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   5.2  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  165 bits (400), Expect = 6e-41
 Identities = 74/104 (71%), Positives = 92/104 (88%)
 Frame = +3

Query: 216 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 395
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 396 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
           KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140



 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 33/66 (50%), Positives = 42/66 (63%)
 Frame = +1

Query: 487 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTG 666
           A++        + LAKLSV+PVRRGYWGNKIG+PHTVP +   +          APRG+G
Sbjct: 127 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSG 186

Query: 667 IVSAPV 684
           IV+A V
Sbjct: 187 IVAARV 192


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  160 bits (388), Expect = 2e-39
 Identities = 73/104 (70%), Positives = 91/104 (87%)
 Frame = +3

Query: 216 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 395
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 396 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
           KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143



 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 34/66 (51%), Positives = 42/66 (63%)
 Frame = +1

Query: 487 ARKSPLPFEALLSLAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTG 666
           A++        + LAKLSV+PVRRGYWGNKIGKPHTVP +   +          APRG+G
Sbjct: 130 AKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSG 189

Query: 667 IVSAPV 684
           IV+A V
Sbjct: 190 IVAAHV 195


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = +3

Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILG 530
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A + G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNG 226


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 435 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILG*VVCFTSSKR 560
           FV +GD + HI LGVKC+K  AT + GAIIL    C   + R
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILAMFRCAEGATR 41


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 497 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 381
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,580,136
Number of Sequences: 37544
Number of extensions: 446184
Number of successful extensions: 1237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)