Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D16
(928 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 1e-45
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.76
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 4.0
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 5.3
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 5.3
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 5.3
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 5.3
SB_58725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 9.3
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 9.3
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 180 bits (439), Expect = 1e-45
Identities = 87/98 (88%), Positives = 92/98 (93%)
Frame = +3
Query: 234 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 413
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAG
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAG 67
Query: 414 QRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
QRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 68 QRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIIL 105
Score = 74.5 bits (175), Expect = 1e-13
Identities = 37/67 (55%), Positives = 44/67 (65%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPVLRSFSRC 705
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRGTGIVSAPV + +
Sbjct: 105 LAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQM 164
Query: 706 *DVTICH 726
+ C+
Sbjct: 165 AGIEDCY 171
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.9 bits (69), Expect = 0.76
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -3
Query: 560 PLRTGKTDNLAKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 381
P + + + NS N D TNMT + + G CL + TC+ L D
Sbjct: 227 PRDVARQIRILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPD 284
Query: 380 L*NLIIQGRAEEEI 339
L NL+ + R ++E+
Sbjct: 285 LGNLMSRSRNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.9 bits (69), Expect = 0.76
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -3
Query: 560 PLRTGKTDNLAKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 381
P + + + NS N D TNMT + + G CL + TC+ L D
Sbjct: 511 PRDVARQIRILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPD 568
Query: 380 L*NLIIQGRAEEEI 339
L NL+ + R ++E+
Sbjct: 569 LGNLMSRSRNQDEL 582
>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1533
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 694 SFLELAQTQFQYHEGQNQPDCYRTTLAGDLAK 599
S ++L+Q QY + +PDC T A DLA+
Sbjct: 539 SAIQLSQDDHQYLVAEKRPDCLDATPATDLAR 570
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 509 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 378
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 363 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 476
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_58725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 592 TVPWQGHRQVWFCNSPADSAPRGTGIVSAPVLRSFSRC*DVTICHGLEL*ALXC 753
++P Q HR+ ++P + GI+S P R ++ +CH + ++ C
Sbjct: 92 SMPCQAHRKYAMSSTPEVCHVKHIGIMSCPAHRKYAMSSTSELCHVKHIGSMPC 145
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 413 TAHTFQGICCHWRQQRSYW 469
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 411 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 500
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 434 ICCHWRQQRSYWFGCEVQQGSRHCH--SRRYYPWLSCL 541
+C ++R YWF C V++ ++ C+ +R WL C+
Sbjct: 5244 LCSRSEKRRGYWFDC-VREMAKLCNRSEKRKGYWLDCV 5280
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,770,534
Number of Sequences: 59808
Number of extensions: 514399
Number of successful extensions: 1391
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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