Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D16
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 158 6e-39
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 30 2.0
AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 30 2.7
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 29 4.7
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 29 4.7
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 8.2
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 8.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.2
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 158 bits (383), Expect = 6e-39
Identities = 80/102 (78%), Positives = 86/102 (84%)
Frame = +3
Query: 219 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 398
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQK
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQK 110
Query: 399 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 524
QT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIV 152
Score = 66.9 bits (156), Expect = 2e-11
Identities = 34/66 (51%), Positives = 41/66 (62%)
Frame = +1
Query: 529 AKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPVLRSFSRC* 708
AKL+V+PVRRGYWGNKIG PHTVP + + APRGTGIVSAPV +
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMA 213
Query: 709 DVTICH 726
+ C+
Sbjct: 214 GIEDCY 219
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 424 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 248
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 247 VTGT 236
+ T
Sbjct: 582 QSNT 585
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 424 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 248
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
Query: 247 VTGT 236
+ T
Sbjct: 582 QSNT 585
>AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical
protein F35B3.4 protein.
Length = 227
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 679 AQTQFQYHEGQNQPDC-YRTTLAGDLAKGRCVAFRSCYPSNLFEL 548
A Q+ +GQ+ DC YR ++ LA +C F P N+ +L
Sbjct: 119 ADIQYCAAQGQDHTDCCYRNSVGTTLAGNKCFTFCDQRPGNVTQL 163
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 631 YRTTLAGDLAKGRCVAFRSCYPSNLFE 551
+ T G L K RCV +C P+N FE
Sbjct: 95 HAVTWIGGLRKARCVNVAACAPANTFE 121
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 631 YRTTLAGDLAKGRCVAFRSCYPSNLFE 551
+ T G L K RCV +C P+N FE
Sbjct: 162 HAVTWIGGLRKARCVNVAACAPANTFE 188
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 622 WFCNSPADSAPRGTGIVSAPVLRSFSRC 705
W C +APRG + + VL+++S+C
Sbjct: 47 WKCYRTKPNAPRGVALTADFVLKAYSKC 74
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 622 WFCNSPADSAPRGTGIVSAPVLRSFSRC 705
W C +APRG + + VL+++S+C
Sbjct: 47 WKCYRTKPNAPRGVALTADFVLKAYSKC 74
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 374 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 517
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 374 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 517
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 622 WFCNSPADSAPRGTGIVSAPVLRSFSRC 705
W C +APRG + + VL+++S+C
Sbjct: 47 WKCYRTKPNAPRGVALTADFVLKAYSKC 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,389
Number of Sequences: 27780
Number of extensions: 363743
Number of successful extensions: 898
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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