Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D16
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.7  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   9.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 275 KNRQTREHLLVFFT 316
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 275 KNRQTREHLLVFFT 316
           KN QTREH L+ FT
Sbjct: 56  KNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 275 KNRQTREHLLVFFT 316
           KN QTREH L+ FT
Sbjct: 72  KNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 275 KNRQTREHLLVFFT 316
           KN QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 646 SAPRGTGIVSAPVLRS 693
           S PRG  IVSA   RS
Sbjct: 717 SGPRGVAIVSASTARS 732


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 457 TVILVWV*SAARKSPL 504
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 227 ERVGSCHQTRPSCSRRKNRQTRE 295
           +   S +    SCSR +NR+ RE
Sbjct: 225 QHTSSRYSRERSCSRDRNREYRE 247


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 308 KQVNALEFVDFSFANKTAEFGDRNPLFLVF 219
           + +++ + V++     T   GD  P+FL F
Sbjct: 355 QDISSPDAVEYGIIGPTTCMGDHKPVFLEF 384


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 239 SCHQTRP-SCSRRKNRQTRE 295
           S H +R  SCSR +NR+ +E
Sbjct: 228 SSHYSRERSCSRDRNREYKE 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,891
Number of Sequences: 438
Number of extensions: 4593
Number of successful extensions: 45
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)