Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D16
(928 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 180 2e-45
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 173 1e-43
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 173 1e-43
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 173 1e-43
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 173 1e-43
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 171 6e-43
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 44 1e-04
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 7.6
At5g47430.1 68418.m05844 expressed protein 28 7.6
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 180 bits (437), Expect = 2e-45
Identities = 80/102 (78%), Positives = 95/102 (93%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIIL 142
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+P+RRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 142 LAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 194
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 173 bits (421), Expect = 1e-43
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 150
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 173 bits (421), Expect = 1e-43
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 150
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 173 bits (421), Expect = 1e-43
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 150
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 173 bits (421), Expect = 1e-43
Identities = 79/102 (77%), Positives = 91/102 (89%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 150
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 202
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 171 bits (416), Expect = 6e-43
Identities = 77/102 (75%), Positives = 91/102 (89%)
Frame = +3
Query: 222 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 401
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 402 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 527
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIIL
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIIL 151
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +1
Query: 526 LAKLSVLPVRRGYWGNKIGKPHTVPWQGHRQVWFCNSPADSAPRGTGIVSAPV 684
LAKLSV+PVRRGYWGNKIGKPHTVP + + APRG+GIV+A V
Sbjct: 151 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARV 203
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/53 (32%), Positives = 34/53 (64%)
Frame = +3
Query: 366 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 524
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAI 201
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 432 AFVAIGDNNGHIGLGVKCSKE 494
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -2
Query: 204 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL**TSQAQNANLKDSL 25
+H R DR EDR + H R H HR PP + T NLK S+
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPPSSEPPVPATKAEIENNLKSSV 776
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,854
Number of Sequences: 28952
Number of extensions: 345545
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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