Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D15
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            96   3e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    95   7e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    30   1.8  
At5g02840.2 68418.m00227 myb family transcription factor contain...    29   3.1  
At5g02840.1 68418.m00226 myb family transcription factor contain...    29   3.1  
At1g01520.1 68414.m00068 myb family transcription factor similar...    29   3.1  
At5g15890.1 68418.m01859 expressed protein                             29   5.4  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   7.2  
At1g09770.1 68414.m01096 myb family transcription factor contain...    28   7.2  
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa...    28   9.5  

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 51/119 (42%), Positives = 73/119 (61%)
 Frame = +3

Query: 96  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 275
           M F R+VE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+ L +L LT  
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58

Query: 276 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 452
            +        +++ +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 59  VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 50/119 (42%), Positives = 71/119 (59%)
 Frame = +3

Query: 96  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 275
           M F RYVE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT  
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58

Query: 276 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 452
            +        + + +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 59  VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
            nodule inception protein [Lotus japonicus] GI:6448579;
            contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
 Frame = +3

Query: 99   PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 272
            P+   + P  + L  + P      L ++ DV  + R   D  GS   R   ++N +  T+
Sbjct: 634  PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693

Query: 273  FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 413
            FRL      P+R V  A  D+  + K   + WA    Q  A+           K     D
Sbjct: 694  FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751

Query: 414  YDRFKLTAARVKRNRARTAVFKSLKVKAA 500
              RFK++   V     +  V K LK++ A
Sbjct: 752  IIRFKISPESVSITELKQQVAKRLKLETA 780


>At5g02840.2 68418.m00227 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 297 APTRLVRKAWTDAKLNEKWTESQ 365
           AP + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At5g02840.1 68418.m00226 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 297 APTRLVRKAWTDAKLNEKWTESQ 365
           AP + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At1g01520.1 68414.m00068 myb family transcription factor similar to
           myb-related protein GI:2505876 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 291 FTAPTRLVRKAWTDAKLNEKWTESQ 365
           F  PT+ VRK +T  K  E WTE +
Sbjct: 44  FEDPTKKVRKPYTITKSRENWTEQE 68


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 220 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 122
           P P T  +VW+ TS   T      P   +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 114 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 266
           + PG V ++  G  KGK V  +  +     LV GP   +GVP +  R+NQ ++
Sbjct: 89  ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +3

Query: 288 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 467
           AF      VRK   + +   +  ++++       E+RA+ T + + + T  + +      
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750

Query: 468 AVFKSLKVKAARAGTFGKKNI 530
             FK+LK +   A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771


>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 530

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 246 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 425
           R + +H  K RL+ A   PT      + D  L    + S    +   +E  A + DY RF
Sbjct: 64  RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,631
Number of Sequences: 28952
Number of extensions: 280190
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)