Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D14
         (1277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.34 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
 Frame = -3

Query: 837 KXXPPPXPXPXKKKKKKKXXX-----CXXPPPPPPP 745
           K  PPP P P ++ + K            PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 8.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 707 PPPPPPXXXXXXXGGG 754
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 704 SPPPPPP 724
           +PPPPPP
Sbjct: 906 TPPPPPP 912


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 828 PPPXPXPXKKKKKKKXXXCXXPPPPPPP 745
           PPP P P  +   +       PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQ-------PPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,596
Number of Sequences: 5004
Number of extensions: 25758
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)