Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D13
(1378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.86
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 2.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 8.0
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.86
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -3
Query: 1358 GXXGGGGGGRXXGXGXXXXXXXXXXXXGXXXXGGXGGGXXXXGGXGXXXXGGG 1200
G GG GG R G G GG GG GG G G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 1172 PXXPPXXXXXPPXXXXXPPXPXXXXPPPXPXXXXP 1276
P PP PP P P PPP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 840 GXXPPXPXXKNXXXXPPPPPPXXP 911
G PP P PPPPPP P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +1
Query: 1168 PPXXXXXXXXXPPPXXXXPXPPXXXXPPPXPP 1263
PP P P P P PPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 11/36 (30%), Positives = 11/36 (30%)
Frame = +1
Query: 1156 PGXXPPXXXXXXXXXPPPXXXXPXPPXXXXPPPXPP 1263
P P PPP P PPP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 21.8 bits (44), Expect(2) = 2.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 1027 PXPPPPXHPPPXPXP 1071
P PPPP P P P
Sbjct: 732 PPPPPPAVIVPTPAP 746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 13/55 (23%), Positives = 16/55 (29%)
Frame = +3
Query: 747 PXXXPPXXXFXXPXPXXXXPGGFFFF*KKXXGXXPPXPXXKNXXXXPPPPPPXXP 911
P PP P ++ + PP K P PPPP P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244
Score = 21.8 bits (44), Expect(2) = 2.6
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +3
Query: 885 PPPPPPXXPXXXXXXXXPXP 944
PPPPP P P P
Sbjct: 240 PPPPPTLPPQSTNTSQLPMP 259
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 2.6
Identities = 27/117 (23%), Positives = 28/117 (23%), Gaps = 3/117 (2%)
Frame = +1
Query: 937 PXPXPKTQXPPXXXXXXXPXSFFFXXXXXXPXPPPPXHPPPXPXPPXXXXXXXXXXXXXX 1116
P P P PP P P P P PP P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 1117 XXXFXXSXXXXXXP--GXXP-PXXXXXXXXXPPPXXXXPXPPXXXXPPPXPPXXXXP 1278
+ P G P P PPP P P PP PP P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/72 (30%), Positives = 22/72 (30%)
Frame = -3
Query: 1370 GXXXGXXGGGGGGRXXGXGXXXXXXXXXXXXGXXXXGGXGGGXXXXGGXGXXXXGGGXXX 1191
G G GGG GG G G G GG GG GG G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPG------------GFGGFGGFGGEGHHHGGHGGFGGGPGGFE 234
Query: 1190 XXXXXXGGXXPG 1155
GG G
Sbjct: 235 GGPGGFGGGPGG 246
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 1027 PXPPPPXHPPPXPXPP 1074
P PPPP PP PP
Sbjct: 11 PPPPPPGFEPPSQPPP 26
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 1027 PXPPPPXHPPPXPXPP 1074
P PPP PP P PP
Sbjct: 12 PPPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,126
Number of Sequences: 5004
Number of extensions: 24180
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 761089174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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