Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D12
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   4.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   6.2  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.2  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 169 RQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 327
           + + RQ K + E       + ++R I C  L PC   ++S   C  P++PI +
Sbjct: 2   QMKPRQDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 110  KLTNILYNKTKWPPKQRMRIANEIASKN-ITMRGNVPKTTKEKEDQYPVAPWLLA 271
            KL N L   T  P  +R     EI++ N + +   +   T     QYPV PW++A
Sbjct: 1905 KLANALSFSTTHPATKRWE-RREISNFNYLQIVNTLAGRTYNDLTQYPVFPWVIA 1958


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 261 QGATGYWSSFSLVVLGTFPLIVMFLLA 181
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 313 YLEH-SRATHYEDEESKEP 260
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 122  ILYNKTKWPPKQRMRIANEIASKNITMRGNVPK-TTKEKEDQYPVAPWLLALFIFVVCGS 298
            + YN   W  K+  +   EI S+      N PK T   K  + P+      L   V  GS
Sbjct: 1053 LFYNNAAWTSKELYKRCEEIISQMSLDERNTPKHTASTKRKRQPIRRVTTNLTSDVPSGS 1112

Query: 299  AV 304
             V
Sbjct: 1113 EV 1114


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 244 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 348
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,548
Number of Sequences: 5004
Number of extensions: 59395
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)