Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D11
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 470  PPPPXXXXXXPXWGPXXPLPPXKKPPXP 553
            PPPP      P   P  P  P   PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
 Frame = +2

Query: 455  PPXKXPPPPXXXXXX--PXWGPXXPLPPXKKPPXP 553
            PP   PPPP        P   P  PLP    P  P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 455 PPXKXPPPPXXXXXXPXWGPXXPLPP 532
           PP   PPPP      P   P  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 23/86 (26%), Positives = 24/86 (27%)
 Frame = +2

Query: 455  PPXKXPPPPXXXXXXPXWGPXXPLPPXKKPPXPXGXRGGAXXXXXXXXXXXXXFPPXXLG 634
            PP   P         P   P  P P    PP P     G               PP    
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-APSSGIPPVPKPAAGVPPVPPP---S 1195

Query: 635  GVPPXKKIFXPSXRXPPXPPXTPXTP 712
              PP  K   PS   PP PP +   P
Sbjct: 1196 EAPPVPK---PSVGVPPVPPPSTAPP 1218


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 552 GXGGFXXGGRGXXGPQXGKXXSXXGGG--GXFXGG 454
           G GGF  G  G  G   G      GGG  G F GG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 21/81 (25%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
 Frame = +2

Query: 455 PPXKXPPPPXXXXXXPXWGPXXP----LPPXKKPPXPXGXRGGAXXXXXXXXXXXXXFPP 622
           PP    PPP      P      P    LPP  +P  P      A              PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 623 XXLGGVPPXKKIFXPSXRXPP 685
             L   P       PS   PP
Sbjct: 204 PPLSQAPVANTSSRPSSFAPP 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,457
Number of Sequences: 5004
Number of extensions: 15050
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)