Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D10
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.40 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.70 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.6  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +2

Query: 623 RGXPP-GKXXXNPKXPPXGPETRKQGPGWRGVFP--HXAPPPPRHKTFKKT---PPP 775
           RG PP G    N   PP  P  R    G   + P    APPPP  ++   T   PPP
Sbjct: 322 RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 24/73 (32%), Positives = 26/73 (35%)
 Frame = -3

Query: 912 PGXPG*XGXGREXGGGGXXGGFXRGGXXPGIXXXSXSGXWAXPLXWGGGVFLNVLCRGGG 733
           PG  G  G G   G G   GG    G  PG       G    P  +GGG+       GG 
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL---GGFGGGP 258

Query: 732 GAXWGKTPRHPGP 694
           G   G    H GP
Sbjct: 259 GGFGGGPGGHGGP 271



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 920 GGAXGXRVXRXGXGNXGXGAGGGVXXGGEXXRGFXXXPGPGVGP 789
           GG  G      G G    G GGG+   G    GF   PG   GP
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 29/96 (30%), Positives = 31/96 (32%)
 Frame = -3

Query: 885 GREXGGGGXXGGFXRGGXXPGIXXXSXSGXWAXPLXWGGGVFLNVLCRGGGGAXWGKTPR 706
           G   GG G  GG   GG  PG       G +       GG        GG G   G    
Sbjct: 184 GHNGGGFGGFGG-GSGGPPPGPGGFGGFGGFGGEGHHHGG-------HGGFGGGPGGFEG 235

Query: 705 HPGPCLRVSGPFGGXFGLXXXFPGGXPRXXGXNRXP 598
            PG      G FGG  G     PGG     G +  P
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +2

Query: 632 PPGKXXXNPKXPPXGPETRKQGPGWRGVFPHXAPPPPRHKTFKKTPP 772
           PP      P  PP  P +    P      P   PPP +     K+PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/68 (25%), Positives = 21/68 (30%)
 Frame = +2

Query: 581 PPXQXXGXRFXPXXRGXPPGKXXXNPKXPPXGPETRKQGPGWRGVFPHXAPPPPRHKTFK 760
           P     G    P      PG+    P       E     P       H  PPP  H+  +
Sbjct: 276 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 335

Query: 761 KTPPPXFR 784
             PPP F+
Sbjct: 336 HMPPPPFK 343



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/65 (24%), Positives = 19/65 (29%)
 Frame = +2

Query: 581 PPXQXXGXRFXPXXRGXPPGKXXXNPKXPPXGPETRKQGPGWRGVFPHXAPPPPRHKTFK 760
           P     G    P      PG+    P       E     P       H  PPP  H+  +
Sbjct: 198 PAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 257

Query: 761 KTPPP 775
             PPP
Sbjct: 258 HMPPP 262


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -3

Query: 921 RGGPGXP--G*XGXGREXGGGGXXGGF---XRGGXXPGIXXXSXSG 799
           RGG G    G  G  R   GGG  GGF    RGG   G    S  G
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,850
Number of Sequences: 5004
Number of extensions: 26261
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)