Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D09
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    27   4.4  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   4.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.7  

>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 448 CLCQWRLVRSCWPSPDVHRS*CCHLRVLRPWCRKP 344
           CLC+   +++    P +    CCH    R WC  P
Sbjct: 8   CLCKAIHLKAIIEEPKLS---CCHCETCRIWCSSP 39


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 241 GKVFGTLGQNDDGLFGKAGYNR-EIFNDDRGQLTGQAYGTRVLGPGGDSTNYG 396
           GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 144 YFCVYTHQDCSDEKQQFGIHFELFVVWLVNSRMSNLKN 31
           YF ++ H D S + + F +H  L + +    R+ NL+N
Sbjct: 408 YFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLEN 445


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 170 NTPSEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVK 292
           N  +  Y+ +  P     +R W  GR +++ DRT  DS+ K
Sbjct: 866 NVNAPHYYLNTQPHLKLESRDWMLGRVTSIEDRTADDSTDK 906


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 170  NTPSEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN 334
            N   +   QS  P  SR     E+ R + L+DR   +   KP+T E  ++ T++N
Sbjct: 1131 NAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVLSKPLTDELLALATSLN 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,727,342
Number of Sequences: 5004
Number of extensions: 85451
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)