Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D09
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             30   2.7  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.7  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               29   4.7  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   6.2  
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      29   6.2  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   8.2  
SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)                    28   8.2  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 32/110 (29%), Positives = 43/110 (39%)
 Frame = +1

Query: 226 TKMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRL 405
           T+ G G  FGT      GLFG AG N        G +TG  +G         ST +GG  
Sbjct: 47  TQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFG 103

Query: 406 DWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGGMVSKEFG 555
             A  N       N    G    T +G+G++   +    + GG  +  FG
Sbjct: 104 STAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGA--AFGGTSTSGFG 146


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 179 SEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN 334
           S+    ++TP+ +     WEEG +S  +DRT  + +   +T+E  S+ T  N
Sbjct: 5   SDYIADANTPLRAGNESFWEEGNTSFKFDRTREEFN-SSITSEESSIETHAN 55


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
 Frame = +1

Query: 163  EEEYPIRGLFSKRHPRDVTWDTKMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQL-- 336
            + +  + GL   R      W T++    V  +   +   LF KA  N ++ +DD   L  
Sbjct: 1077 DSQAKLSGLDILRQMESAGWKTRLAAIGVTRSPVTSQQALFAKAAVNAQLQSDDGKALRV 1136

Query: 337  TGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASG--SGVWDLDK 510
            T +  G  V+     ST+  G L     + +    +N  + G+  +TAS   +G    D+
Sbjct: 1137 TMETDGDLVV-----STDCLGEL----LDRRFTCKVNGSMTGKLTLTASMQIAGAPKGDQ 1187

Query: 511  NT-HISA-GGMVSKEFGHRRPDVGLQAEIR 594
            NT H++  G  V K+    R + G+Q  +R
Sbjct: 1188 NTVHVTGDGAAVDKKTDQCRHNKGIQFTLR 1217


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/99 (26%), Positives = 36/99 (36%)
 Frame = +2

Query: 155 LITKKNTPSEAYFQSDTPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN 334
           L T+K   + +   S T  T   T K     S++    TT  S+     T   S  T   
Sbjct: 432 LSTQKTDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTT-- 489

Query: 335 *PARLTAPGS*DPEVTALTTVDVWTGPTRTHKPPLT*TD 451
                T P +   + T  T V+  T P  T   P T T+
Sbjct: 490 --KATTTPSTSTTKATTSTAVEATTSPAATETAPPTTTE 526


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
 Frame = +1

Query: 133 NAEVYRSPDYEEEYPI-RGLFSKRHPRDVTWDTKMGGGKVFGTLGQNDDGLFGKAGYNRE 309
           N +   +P    + P  R L  + H +D        G  ++   G NDD  FG +G   +
Sbjct: 284 NLQTTHAPSQPADQPTNRSLDCRAHRQDTP------GHGLYSNDGNNDDAHFGDSG-RHD 336

Query: 310 IFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKN 423
            FNDD     G   G         + NY   ++  N N
Sbjct: 337 NFNDDISN-DGNLNGGGANNNNNKNNNYNSGINNNNNN 373


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 512 TPTSQPAVWSR---RNLVTEDQTSVFKQRSGMSGDCQHNPIIH 631
           TP +QP++W R    N  T   T +F+Q++G SG     P  H
Sbjct: 295 TPQTQPSMWQRTSASNTATVSST-LFQQQTGGSGHTSAWPYAH 336


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 628 NDGIVLTITTHAGSLLEDRRLVFCDQIPSRPYRRLRCGCSYQDPTHR 488
           +DG++L +T  +    ED +       P +P++R   G  YQ  THR
Sbjct: 211 DDGLMLNLTNFS---TEDTKKSAIRTGPKKPFKRKEKGNDYQKSTHR 254


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 134 TQKYTGLLITKKNTPSEAYFQSDTP---VTSRGTRKWEEGRSS 253
           TQ+   +   KK+   +AYF+S TP    + R    W+E  +S
Sbjct: 187 TQQNASISEQKKSKKKDAYFRSQTPDYFKSDRANNSWDEPEAS 229


>SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 304 CCNRLYRRVHRRSVPKCRR 248
           C NR YRR  RR   +CRR
Sbjct: 282 CLNRTYRRAFRRLFRRCRR 300


>SB_11732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 449  DKSEADLE*QPRAPVCGILI-RTPTSQPAVWSRRNLVTEDQTSVFKQRSGMSGD 607
            D+ EA    +  +PVCG  + R  +    VW+ R  + + + S+    S + GD
Sbjct: 1123 DEREARHRIREPSPVCGGSVQRNNSGSSEVWAERRRMFQKRNSISSMASSVEGD 1176


>SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)
          Length = 320

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 513 HPHLSRRYGLEGIWSQKTRRRSSSRDPA*VVIVNTIPSFIE 635
           +P L   YGL+  W  K   RS  + P     +NT+ S I+
Sbjct: 108 NPKLKLEYGLQESWKTKMESRSHGKKPHMESGINTLGSGIQ 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,402,331
Number of Sequences: 59808
Number of extensions: 693662
Number of successful extensions: 1523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)