Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D09
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    28   7.2  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   9.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   9.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   9.5  

>Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical
           protein T27F6.1 protein.
          Length = 448

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 841 FITKYEIKQNTVWHNYIKKTSYQYIICKTYFVNNIDIFL 725
           F+  Y++ +N  W +Y + +S+Q  I K Y  +N D+F+
Sbjct: 23  FLYNYQVYRNHYW-SYTQNSSFQEDIAKFYPTSNKDVFV 60


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +1

Query: 262 GQNDDGLFG--KAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAA 435
           GQN   + G  + GY       D G    Q  G  V G GG S +YG +     +  Q  
Sbjct: 69  GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127

Query: 436 IDINRQIGGRSGMTASGS 489
              N    G SG  ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 26/86 (30%), Positives = 30/86 (34%)
 Frame = +1

Query: 235 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDWA 414
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG  D  
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGGGGD-G 221

Query: 415 NKNAQAAIDINRQIGGRSGMTASGSG 492
                         GG  GM   G G
Sbjct: 222 GYGPSGGYGGGYGPGGGYGMGGGGGG 247


>Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B8.4 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 781 SYQYIICKTYFVN---NIDIFLNQSKITFYTSNYKIYTE 674
           +Y+Y++  + F+     +  F+NQ K+ FY ++Y IY+E
Sbjct: 35  NYKYLMLISSFLKVFIGVLHFINQPKVHFYQASYVIYSE 73


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 322 HH*KSLCCNRLYRRVHRRSVPKCRRPSLLPFSCPT 218
           H    +CCN L RR  RRS P    P   P S  T
Sbjct: 281 HRFSQMCCNSLRRRPVRRSHPISPSPGTSPSSVVT 315


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 225 VPRDVTGVSL*K*ASDGVFFFVIRRPVYFCVYTHQDCSDEKQQF---GIHFELFVVW 64
           +P  V G+SL   ++  +F   I  P+Y  VY + D +D+   F     HF   + W
Sbjct: 10  IPNTVAGISLFIFSAIYLFSLFIMFPIYVYVYRYNDKNDKMALFHPITSHFYKMIKW 66


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 178 IRGLF-SKRHPRDVTWDTKMGGGKVFGTLGQNDD 276
           + GL+ + R  +D+  +T   G KVF   G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
 Frame = +2

Query: 203 TPVTSRGTRKWEEGRSSALWDRTTMDSSVKPVTTERFSMMTAVN*PARLTAP--GS*DPE 376
           TP T+  T       ++     TT +++  P TT      T        T P   +  P 
Sbjct: 124 TPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPT 183

Query: 377 VTALTTVDVWTGPTRTHKPPLT*T 448
            T  T     T PT T   P T T
Sbjct: 184 TTTTTPTTTTTAPTTTTTTPTTTT 207


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 492
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 492
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSG 492
           Q +G    G  GG+  N GG      +N Q   + N   GG  G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,405
Number of Sequences: 27780
Number of extensions: 498235
Number of successful extensions: 1356
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)