Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D09
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10860.1 68417.m01768 hypothetical protein various predicted ...    29   2.9  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.1  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    28   6.8  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   6.8  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    28   8.9  

>At4g10860.1 68417.m01768 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 178

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 778 YQYIICKTYFVNNIDIFLNQSKITFYTSNYKIYT 677
           Y+ +I K Y   N+D+F ++ KI   T++  IYT
Sbjct: 83  YRVLIWKQYGTINLDVFYDEMKIWCKTNDLGIYT 116


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 316 NDDRGQLTG--QAYGTRVLGPGGDSTNYGGR 402
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 64  PNHKQLKMNSKLLFFIATVLVCVNAE-VYRSPDYEEEYPIRGLFSKRHPRDVTWDTKMGG 240
           PN    K    ++  +  +L CV    +Y      E YP +G  S+     +T+D ++  
Sbjct: 472 PNSSMGKFTLGVIVILGLLLTCVGVRYIYGGSGAVEPYPFKGHLSQFTLATMTYDARLWN 531

Query: 241 GKVF 252
            K++
Sbjct: 532 LKMY 535


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 259 LGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLD 408
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 574 RRLVFCDQIPSRPYRRLRCGCSYQDPTHRSPRLSFQICLR 455
           RR++ C   P+RP+R + CG  +    +  P   F++  R
Sbjct: 145 RRVLSCAIKPTRPFRIVTCGEDFLVNFYEGPPFKFKLSSR 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,531,529
Number of Sequences: 28952
Number of extensions: 456989
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)