Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D06
(888 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 124 3e-27
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 105 1e-21
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 77 6e-13
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 52 3e-05
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.048
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.085
UniRef50_UPI0000EB0C63 Cluster: UPI0000EB0C63 related cluster; n... 35 3.2
UniRef50_A5K057 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.6
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.6
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q54YD0 Cluster: Putative uncharacterized protein; n=1; ... 33 7.4
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 33 9.7
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 124 bits (299), Expect = 3e-27
Identities = 63/84 (75%), Positives = 65/84 (77%)
Frame = +3
Query: 480 SKRPXTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKLPRALSWFPT 659
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP + P F
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF-R 60
Query: 660 PARLPDTCPPFSLREAXRFLIAHA 731
P RLPDTCPPFSLREA RFLIAHA
Sbjct: 61 PCRLPDTCPPFSLREAWRFLIAHA 84
Score = 44.4 bits (100), Expect = 0.004
Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 617 FPLEAPSCALL-----VPDPCPLTGYLSA--FLPSGSVXLSHSSRWYVSQFXVGPFRXQX 775
FPLEAPSCALL +PD CP A FL + +V +S R + + V
Sbjct: 48 FPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAV------- 100
Query: 776 GLCAPXPRSARXLXPYPVTIXLSPTR 853
C P S PYPVTI LSPTR
Sbjct: 101 --CTNPPFSPTAA-PYPVTIVLSPTR 123
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 105 bits (253), Expect = 1e-21
Identities = 65/116 (56%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Frame = +3
Query: 312 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 491
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 492 XTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKLPR-ALSWFP 656
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFP P AL + P
Sbjct: 77 I---RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLP 129
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 77.0 bits (181), Expect = 6e-13
Identities = 39/54 (72%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Frame = +3
Query: 498 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKLPR-ALSWFP 656
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFP P AL + P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -2
Query: 488 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 375
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 288 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 455
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 51.6 bits (118), Expect = 3e-05
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = -1
Query: 819 GXSXRAERGXGAHSPXWXRNGPTXN*DTYQREL*ESXTLPEGRKADRYPVSGQGSG-TRR 643
G S RAERG A+SP W P + DT ++ P+G+KA++ VSG+ G RR
Sbjct: 19 GRSSRAERGVRAYSPAWSER-PKPSRDTSSVSYEKAPRFPKGKKAEQ--VSGKRQGRNRR 75
Query: 642 AHEGASRGNAWYLYSPVG 589
AHEGA+ + SPVG
Sbjct: 76 AHEGAAGEKSPASLSPVG 93
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 47.2 bits (107), Expect = 6e-04
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +3
Query: 387 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPXTVKRPRCWRFSIGSAPLTSITK 560
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 561 IDAQVRGGETRQDYKDTRRFPWKLPRALSWFP 656
I Q + +T+ +YK T FP + P FP
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFP 113
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +2
Query: 665 PLTGYLSAFLPSGSVXLSHSSR 730
PLTGYLSAFLPSGSV LSHSSR
Sbjct: 9 PLTGYLSAFLPSGSVALSHSSR 30
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 91 DPDMIRYIDEFGQTTTRMQ 147
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 407 HSKAVIRLSTESGDNAGKNM 466
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.048
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 286 SALMNRPTRGERRFAYW 336
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.085
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 358 ERGSGRAPNTQTASPRALADSLMQ 287
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_UPI0000EB0C63 Cluster: UPI0000EB0C63 related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB0C63 UniRef100
entry - Canis familiaris
Length = 427
Score = 34.7 bits (76), Expect = 3.2
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 583 AKPDRTIKIPGVSPGSSLVRSPGSRPLPAYRIPVRL-SPFGKRXA 714
A+P RT +PG +PG ++ + PG RP P R P SP G R A
Sbjct: 367 ARPTRTPPVPGENPG-AVAQPPGGRPRPKPRPPGDAPSPQGPRPA 410
>UniRef50_A5K057 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1394
Score = 34.3 bits (75), Expect = 4.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 804 AERGXGAHSPXWXRNGPTX--N*DTYQREL*ESXTLPEGRKADRYPVSGQGSGTRRAHEG 631
A+R HSP R G + + ++Y E + EGR + PV+G G G RAH
Sbjct: 737 ADRADEPHSPEGNRGGGSDAFSYESYNLFYPEGESSEEGRSKEGAPVTGSGQGGARAHTP 796
Query: 630 ASRG 619
+ G
Sbjct: 797 LTGG 800
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.6
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 497 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 375
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 169 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 336
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.6
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 249 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 85
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q54YD0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 635
Score = 33.5 bits (73), Expect = 7.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 597 DYKDTRRFPWKLPRALSWFPTPARLPDTCPPFSLRE 704
DY TR + W+L R WF P+ PD+ P SL E
Sbjct: 356 DYSGTRSWTWQLCREYGWFMVPSG-PDSFKPQSLGE 390
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 33.1 bits (72), Expect = 9.7
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 573 VRGGETRQDYKDTRRFPWKLPRALSWF-PTPARLPDTCPPFSLREAXRFLIAHAGTYLSS 749
VR GETRQD K LP ALS P +R+P PPFSL A ++H+ S
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIP--VPPFSL--AGSVALSHSSHSGIS 78
Query: 750 V*VRS-AXXLGCVHXPPVQP 806
RS A PP P
Sbjct: 79 ARCRSFAPSWAVSKNPPFSP 98
Score = 33.1 bits (72), Expect = 9.7
Identities = 23/55 (41%), Positives = 27/55 (49%)
Frame = +2
Query: 689 FLPSGSVXLSHSSRWYVSQFXVGPFRXQXGLCAPXPRSARXLXPYPVTIXLSPTR 853
F +GSV LSHSS +S F + P S PYPVT+ LSPTR
Sbjct: 61 FSLAGSVALSHSSHSGISA-RCRSFAPSWAVSKNPPFSPTAA-PYPVTVHLSPTR 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,598,695
Number of Sequences: 1657284
Number of extensions: 15679630
Number of successful extensions: 43134
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 41011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43099
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -