Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D06
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   2.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   4.7  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 547 RASQKSTLKSEVAKPDRTIKIPGVSPGSSLVRSPGS-RPLPAYRIPVRLSPFGKRXAFS* 723
           R  + S +K   A   RTI + GV+P  S +R P   +P+P  ++ VR  P  K+     
Sbjct: 505 RLERTSPVKELPAIRPRTIPLNGVAPYESELRPPPKWKPMPDLKV-VRSRPSLKQRPLRS 563

Query: 724 LTLVRI 741
              VR+
Sbjct: 564 AEYVRV 569


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 548 EHHKNRRSSQRWRNPTGL*RYQAFPLEAP 634
           ++HKNR+S+     P GL  Y+A  L  P
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGP 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,230
Number of Sequences: 5004
Number of extensions: 58597
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)