Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D06
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59830.1 68416.m06676 ankyrin protein kinase, putative simila...    31   0.77 
At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)...    31   1.4  
At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)...    31   1.4  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   7.2  
At4g04490.1 68417.m00651 protein kinase family protein contains ...    28   9.5  

>At3g59830.1 68416.m06676 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 477

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 462 TCEQKASKRPXTVKR--PRCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPWK 629
           T   K+   P  +K     CW   I   P+ S  I ++D  V     +  +KDT +FPWK
Sbjct: 418 TIRTKSKSYPPELKELIEECWHPEISVRPIFSEIIIRLDKIVTNCSKQGWWKDTFKFPWK 477


>At2g43850.2 68415.m05452 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 474 KASKRPXTVKR--PRCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPWK 629
           K+   P  +K    +CW    G  P  S  I ++D  V     +  +KDT +FPWK
Sbjct: 424 KSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKFPWK 479


>At2g43850.1 68415.m05451 ankyrin protein kinase, putative (APK1)
           similar to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674;contains Pfam profile PF00069:
           Protein kinase domain; contains Pfam profile PF00023:
           Ankyrin repeat
          Length = 479

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 474 KASKRPXTVKR--PRCWRFSIGSAPLTS--ITKIDAQVRGGETRQDYKDTRRFPWK 629
           K+   P  +K    +CW    G  P  S  I ++D  V     +  +KDT +FPWK
Sbjct: 424 KSRSYPPDIKELIEKCWHPEAGIRPTFSEIIIRLDKIVANCSKQGWWKDTFKFPWK 479


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -2

Query: 587 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 408
           F  S  S+D+         YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 407 ELIPL 393
              PL
Sbjct: 198 GYAPL 202


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 536 RPPDEHHKNRRSSQRW 583
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 345  PLPRSLTRCARSFGCGERYQLTQRR 419
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 345  PLPRSLTRCARSFGCGERYQLTQRR 419
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 336 PIRKPPLPARWPIH*CRKNLPHL 268
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 587 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 411
           F  S  S+D+    Q     YG   A  P YGS P  G+    +   YP + +     P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197

Query: 410 SELIPL 393
           +   PL
Sbjct: 198 TGYAPL 203


>At4g04490.1 68417.m00651 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 658

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +3

Query: 495 TVKRPRC---WRFSIGSAPLTSITKIDAQVRGGETRQDY--KDTRRF-PWKLPRALSWFP 656
           TV RP C   W     +    ++ ++ A  R  +TRQDY  K  R F PW +   +  FP
Sbjct: 231 TVARPSCYFRWDDYRFAGAFDNLERVPAPPRSPQTRQDYRVKKGRMFQPWSV--VVVVFP 288

Query: 657 TPARL 671
           T   L
Sbjct: 289 TGINL 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,131
Number of Sequences: 28952
Number of extensions: 344545
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)