Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D05
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   7.7  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 281 FRANNGTSTGTTEKNGMWKP--FVYCFHIRLCLC 186
           + +++ T+    E+   W+   F+ C HIR C+C
Sbjct: 29  YDSDSPTTVHHDERKESWRSHGFIVCLHIRCCIC 62


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 135 NDIPDLKQKSALVTTEITKTQSDVK 209
           + + D K  +A++++E+TK+  DVK
Sbjct: 738 SSLSDAKNTNAILSSELTKSSEDVK 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,346
Number of Sequences: 5004
Number of extensions: 67361
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)