Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D05
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754...    30   2.0  
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843...    30   2.0  
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    29   3.5  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           29   3.5  
02_01_0435 - 3164421-3165032                                           29   6.2  
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785...    29   6.2  
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880...    28   8.1  

>04_01_0580 -
           7539208-7539328,7539409-7539579,7539658-7540024,
           7540093-7540516
          Length = 360

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 189 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 302
           +T++D KA+HE  P     GG    S+++PK + L  GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163


>02_02_0270 +
           8431503-8431830,8431961-8432149,8434288-8434412,
           8434527-8434703,8434798-8434871,8434978-8435713
          Length = 542

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 528 KVATLDDQPNLP--IGVDVGYAGYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYXSLD 701
           KVA +  QP     +G      G+G D  GGV+ K  H++  S  +     +L+    + 
Sbjct: 234 KVANMASQPGSSGTVGSKKRKWGFGVDPTGGVLTKGTHSLTSSPDNAPTSGRLKPMRFMS 293

Query: 702 MICAKGRP 725
              AK  P
Sbjct: 294 KSKAKAAP 301


>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 171 PAQIFVLNPVCHWRRVEVARTHLPPARSPREPTVCWRTSCHCQIL 37
           PAQ   ++P+      +VA   LPPAR+ + P++  R   H  I+
Sbjct: 681 PAQPPAMSPMPLLTGSDVAEPPLPPARTAQAPSLASRMQAHAAIV 725


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 171 VTTEITKTQSDVKAVHERFPHAVL--FGGTCGGSIISPKWILTAGHCTLFTNGHYVLAG 341
           +TT      SD+  + E     VL  +GG+  G ++S  WI +  H T    G+Y  +G
Sbjct: 346 LTTVEASMNSDILLIRELHWLEVLRLYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSG 404


>02_01_0435 - 3164421-3165032
          Length = 203

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 824 SFSNPXRQPPTSRPXXFXEPAA---TITIASRVEPWGATFSA 708
           S S P   PP  +P     PAA   T + +S VE WG T +A
Sbjct: 73  SSSAPPPPPPQHQPPQHLPPAAAAATSSHSSTVESWGVTVAA 114


>01_06_0997 +
           33676441-33676758,33678223-33678314,33678443-33678540,
           33678824-33678979,33679106-33679731,33679826-33679896,
           33679987-33680241,33680337-33680454,33680595-33680766,
           33680854-33681395
          Length = 815

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 159 KSALVTTEITKTQSDVKAVHERFPHAVLFGGTCGGSIISP 278
           KSA+VTT  TK + D   + E  P  V      GG  I+P
Sbjct: 629 KSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINP 668


>09_04_0324 -
           16686872-16687074,16687479-16687521,16687735-16688068,
           16688190-16688854
          Length = 414

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 606 HGGVMRKDMHAMELSTQSDEVCSKLEQYXSLDMICAKG 719
           H GV+ +    MEL  ++D   ++L ++ S   +CA+G
Sbjct: 188 HEGVVARSYSVMELVLEADSNKAQLWEFSSASGVCAEG 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,480,761
Number of Sequences: 37544
Number of extensions: 531965
Number of successful extensions: 1481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)