Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D05
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B...    30   2.2  
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de...    29   5.1  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    28   6.8  
At3g45700.1 68416.m04939 proton-dependent oligopeptide transport...    28   6.8  
At5g62660.1 68418.m07864 F-box family protein contains Pfam prof...    28   9.0  
At1g44318.1 68414.m05109 porphobilinogen synthase, putative / de...    28   9.0  

>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
           domain-containing protein low similarity to Rev1S [Homo
           sapiens] GI:12483635; contains Pfam profiles PF00817:
           ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
           domain
          Length = 1102

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 609 GGVMR-KDMHAMELSTQSDEVCSKLEQYXSLDMICAKGRPPRFDSACNGDSGSGLXE 776
           GGV R ++ ++ E S QS +  S L     LDM   +  PP   S  +G  G  L E
Sbjct: 776 GGVSRLRESNSEESSIQSGDTNSSLPPMCYLDMEVLENLPPELLSELDGTYGGKLFE 832


>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 430

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 519 KTIKVATLDDQPNLPIGVDVGYAGYGTDEHGGVMRKD 629
           +TI++   D  P+L I  DV    Y +D H G++R+D
Sbjct: 203 RTIRLLK-DKYPDLIIYTDVALDPYSSDGHDGIVRED 238


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 323 TVREQCAVSRSE-DPFRANNGTSTGTTEKN 237
           T  E  AV+ S+  PFR NN TS+ +T  N
Sbjct: 154 TSSENSAVNNSQRKPFRRNNNTSSSSTSSN 183


>At3g45700.1 68416.m04939 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 548

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -3

Query: 376 RIMPLWSSDLLVPANT**PFVNSVQCPAVRIHFGLIMEPPQVPPKRTACGNLSCTAFTSD 197
           R++PLW+S + + A    P    +    ++    ++M+    P  + + G++   A  S 
Sbjct: 315 RLVPLWTSVMFLSA----PLAVQMSMTVLQ---AMVMDRKLGPHFKVSAGSMQVIALVSG 367

Query: 196 CVFVI 182
           CVF+I
Sbjct: 368 CVFII 372


>At5g62660.1 68418.m07864 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 379

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 162 IFVLNPVCHWRRVEVARTHLP 100
           +FVL P   W+R+E  + HLP
Sbjct: 221 VFVLEPGGSWKRIEFDQPHLP 241


>At1g44318.1 68414.m05109 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 406

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 543 DDQPNLPIGVDVGYAGYGTDEHGGVMRKD 629
           D  P+L I  DV +  Y T  HGG++ +D
Sbjct: 187 DRFPDLVIYTDVNFDEYSTTGHGGIVGED 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,439
Number of Sequences: 28952
Number of extensions: 382981
Number of successful extensions: 890
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)