Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D04
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.71 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +1

Query: 670 SXXGXGPPP-PXASXXPPTXPPXXNPS--PPPXXPXLPSXPPA 789
           S    GP P P  S   P      NPS  PPP  P  P  PP+
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP--PGAPPS 57



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 685 GPPPPXASXXPPTXPPXXNPSPPP 756
           G PP  +   PP  PP   PS  P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 468 PAPXXGXXGGGPPG 427
           P P  G   GGPPG
Sbjct: 40  PNPSQGPPPGGPPG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,794
Number of Sequences: 438
Number of extensions: 4848
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)