Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D03
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.4  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   6.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   7.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -3

Query: 692 YITNWFVFFDNSVIITYFLVQGNHPSS*RSPFYF*LPC*QNIEDKLRMEPGRTK 531
           Y  N   F  N  +  Y  +  NHPS  RSPF       Q  E+ L+    + K
Sbjct: 301 YSDNIIRFGSNVTLQVYCFINVNHPSLNRSPFTLATNSMQEEEEHLKASFAQNK 354


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 338 GKESDLVHHHEIXVGFHVCVAVLAGLDVEVLG 243
           G  S  +HHH++ +  H  +  L G   EV G
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG 309


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 426 ECFYKTACYARVYMNQGMFLYAYYIAIIQRSDTAKLRSTWLHTKLILNILS 578
           EC    A   R  +N     Y YYI  I  SD+A++   +L  KLI  + S
Sbjct: 378 ECALAAAGECRQQLNFQDATY-YYIEAIPFSDSAEIIKFYLEKKLIKELTS 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,072
Number of Sequences: 5004
Number of extensions: 55550
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)