Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_D03
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78414-3|CAD60425.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 9.8
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 9.8
AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical ... 28 9.8
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ... 28 9.8
AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical ... 28 9.8
>Z78414-3|CAD60425.1| 309|Caenorhabditis elegans Hypothetical
protein W09D12.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/110 (20%), Positives = 42/110 (38%)
Frame = +3
Query: 273 DCYTNMKAYXNFMMMYKVGFLPKNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACY 452
D + N+ Y N + ++ + F IF E + L KLF + Y
Sbjct: 44 DIFVNITCYINSWLAIRLEYFEIGRTFLIFLESSLPGCLTLSKLF-----------VSLY 92
Query: 453 ARVYMNQGMFLYAYYIAIIQRSDTAKLRSTWLHTKLILNILSTWKLKIKW 602
+ G+FL Y + ++ K+ + W +L +L ++ + W
Sbjct: 93 FHLQNVTGLFLVIYRFTSVYSINSEKVWNRWYFLVPVLGLLYSFIIISPW 142
>Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical
protein T03D8.3 protein.
Length = 211
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 299 VGFHVCVAVLAGLDVEVLGDFVVLS-FIVDLVN 204
V F V VA + GLD+E GDFV+ S +DL++
Sbjct: 8 VFFTVGVAAIYGLDLENAGDFVLPSGDFIDLIS 40
>Z82075-6|CAN99721.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 261 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 315
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 316 KIGLLEYFENMKEHKLKKYLNLI 338
>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 235 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 289
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 290 KIGLLEYFENMKEHKLKKYLNLI 312
>Z82075-4|CAB04932.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 237 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 291
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 292 KIGLLEYFENMKEHKLKKYLNLI 314
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 339 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 473
KN+ ++M +EAI LF+ FE +YK R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 339 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 473
KN+ ++M +EAI LF+ FE +YK R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AL021489-6|CAN99715.1| 1047|Caenorhabditis elegans Hypothetical
protein W07A8.2c protein.
Length = 1047
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 261 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 315
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 316 KIGLLEYFENMKEHKLKKYLNLI 338
>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 235 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 289
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 290 KIGLLEYFENMKEHKLKKYLNLI 312
>AL021489-4|CAA16371.1| 1023|Caenorhabditis elegans Hypothetical
protein W07A8.2a protein.
Length = 1023
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 380 RSHRAVQAVLLCQRF*MFLQNSMLRQSLHEPGNVLIR-LLHSYYPALRHRQT--SFYLAP 550
RSH+ V LC+R +N L + P NV I+ LH+ + LR T S +++
Sbjct: 237 RSHKLADVVALCER---CRENPELFRVF--PKNVNIKDYLHTIFHELRDNMTWKSVHISS 291
Query: 551 YEAYPQYFVNMEVKNKMDYVKMM 619
+YF NM+ Y+ ++
Sbjct: 292 KIGLLEYFENMKEHKLKKYLNLI 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,538
Number of Sequences: 27780
Number of extensions: 301851
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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