Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D03
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   7.0  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family...    28   9.2  

>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 443 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 327
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 572 FVNMEVKNKMDYVKMMDGCLEXEN 643
           F  MEVKN++ +  M+ GC+  +N
Sbjct: 208 FDQMEVKNEVSWTAMISGCVANQN 231


>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 554

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +2

Query: 296 LXKFHDDVQGRIPSQEFGILDLLRKNEGRSHRAVQAVLLCQRF*MFLQNSMLRQ----SL 463
           L KFH  ++  +   E     +L + EG  H+ ++A+ +       L+  M+++     +
Sbjct: 390 LQKFHHRIESVLEKLE-DETQVLARCEGFPHKKLEAIRMAAALYSKLEG-MIKELKNWKI 447

Query: 464 HEPGNVLIRLLHSYYPALRHRQTSFYL 544
             P N L      Y+    HR T F L
Sbjct: 448 ESPANQLYDKTERYFAKASHRNTDFRL 474


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,036
Number of Sequences: 28952
Number of extensions: 275567
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)