Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D02
         (864 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   7.1  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/49 (34%), Positives = 17/49 (34%)
 Frame = +3

Query: 657 PXPXXXXPXAPXXPPXPXXGPPGPPPXXXPPLPXXXXPPPPXPPXRXPP 803
           P P    P  P  PP        PP    PPLP     PP  PP    P
Sbjct: 153 PNPSIIDP-GPALPPTGFLCNNYPPLPQVPPLPL----PPIFPPTMINP 196


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 717  PPGPPPXXXPPLPXXXXP 770
            PP PP    PPLP    P
Sbjct: 1376 PPIPPTSEKPPLPEELKP 1393



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 774  PPXPPXRXPPPXP 812
            PP PP    PP P
Sbjct: 1376 PPIPPTSEKPPLP 1388


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 687 PXXPPXPXXGPPGPPPXXXPPLPXXXXPPP 776
           P  PP     P G PP   P L      PP
Sbjct: 187 PLLPPSFGIFPGGAPPLVSPFLAAMAHRPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,343
Number of Sequences: 336
Number of extensions: 3590
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)