Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D01
         (1432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/64 (26%), Positives = 20/64 (31%)
 Frame = +1

Query: 574  PXAXXALXPXPXRXQGPPXPPP*EXXPPAXXXSXSXXAXXXXPRPXXXXPXXPXXXXXXX 753
            P    A+ P P     PP P P    PP    S +       P+P    P  P       
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV----PKPSVAAPPVPAPSGAPP 1160

Query: 754  XPXP 765
             P P
Sbjct: 1161 VPKP 1164



 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/84 (23%), Positives = 25/84 (29%)
 Frame = +1

Query: 574  PXAXXALXPXPXRXQGPPXPPP*EXXPPAXXXSXSXXAXXXXPRPXXXXPXXPXXXXXXX 753
            P     + P P   + PP P P    PP    S +       P P    P  P       
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV----PTPSAGLPPVP-VPTAKA 1236

Query: 754  XPXPRTRXTSVXXXTPXTGGXRPH 825
             P P     +    TP +    PH
Sbjct: 1237 PPVPAPSSEAPSVSTPRSSVPSPH 1260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,626
Number of Sequences: 5004
Number of extensions: 7673
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 796858378
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)