Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_D01
         (1432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54215.1 68414.m06180 proline-rich family protein contains pr...    30   4.3  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    29   7.5  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   9.9  

>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 16/59 (27%), Positives = 19/59 (32%)
 Frame = +1

Query: 598 PXPXRXQGPPXPPP*EXXPPAXXXSXSXXAXXXXPRPXXXXPXXPXXXXXXXXPXPRTR 774
           P P     PP PPP    PP    + S       P P       P        P PR++
Sbjct: 43  PPPPPPPPPPPPPPPPPPPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQPPPRSQ 101


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 17/67 (25%), Positives = 19/67 (28%)
 Frame = +1

Query: 622 PPXPPP*EXXPPAXXXSXSXXAXXXXPRPXXXXPXXPXXXXXXXXPXPRTRXTSVXXXTP 801
           PP PP     PP      S       P P    P  P        P P    +S    +P
Sbjct: 412 PPPPPSPPLPPPVYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSPPPPSP 471

Query: 802 XTGGXRP 822
              G  P
Sbjct: 472 EFEGPLP 478


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 21/83 (25%), Positives = 22/83 (26%)
 Frame = +1

Query: 574 PXAXXALXPXPXRXQGPPXPPP*EXXPPAXXXSXSXXAXXXXPRPXXXXPXXPXXXXXXX 753
           P     + P P     P   PP    PP    S         P P    P  P       
Sbjct: 75  PAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVS 134

Query: 754 XPXPRTRXTSVXXXTPXTGGXRP 822
            P P T   SV   TP      P
Sbjct: 135 PPPP-TPTPSVPSPTPPVSPPPP 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,838
Number of Sequences: 28952
Number of extensions: 77996
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3778328064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)