Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_C24
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.008
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.24 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = +3

Query: 714 LXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPPPXXXXXXXXXXXPPXPP 884
           L  K PP PP           P   PPP    G     PPP           PP PP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = +3

Query: 663 SXPPPPXXXFFXXPPHYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPPP 836
           S PPPP       P       PPP P          G P   PPP    G     PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAP--------IMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 790 PPXFPEXAXXXPPPPPRGPXXXLXXXXPXXPP 885
           PP  P      PPPPP G         P  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 27/100 (27%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
 Frame = +3

Query: 669 PPPPXXX----FFXXPP-HYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPP 833
           PPPP           PP H+   +  P PP    +      P   PPP+         PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMP---PPPMHHEPGEHMPPP 262

Query: 834 PXXXXXXXXXXXPPX---PPXXLPPPRXXXXXXXAXPPPP 944
           P           PP    P   +PPP          PPPP
Sbjct: 263 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 27/100 (27%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
 Frame = +3

Query: 669 PPPPXXX----FFXXPP-HYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPP 833
           PPPP           PP H+   +  P PP    +      P   PPP+         PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMP---PPPMHHEPGEHMPPP 275

Query: 834 PXXXXXXXXXXXPPX---PPXXLPPPRXXXXXXXAXPPPP 944
           P           PP    P   +PPP          PPPP
Sbjct: 276 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 27/100 (27%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
 Frame = +3

Query: 669 PPPPXXX----FFXXPP-HYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPP 833
           PPPP           PP H+   +  P PP    +      P   PPP+         PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMP---PPPMHHEPGEHMPPP 288

Query: 834 PXXXXXXXXXXXPPX---PPXXLPPPRXXXXXXXAXPPPP 944
           P           PP    P   +PPP          PPPP
Sbjct: 289 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 27/100 (27%), Positives = 32/100 (32%), Gaps = 8/100 (8%)
 Frame = +3

Query: 669 PPPPXXX----FFXXPP-HYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPP 833
           PPPP           PP H+   +  P PP    +      P   PPP+         PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP--MHHEPGEHMP---PPPMHHEPGEHMPPP 301

Query: 834 PXXXXXXXXXXXPPX---PPXXLPPPRXXXXXXXAXPPPP 944
           P           PP    P   +PPP          PPPP
Sbjct: 302 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
 Frame = +3

Query: 702 PPHYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPPPXXXXXXXXXXXPPX- 878
           P H+   +  P PP    +      P   PPP+         PPP           PP  
Sbjct: 198 PAHHEPGEHMPPPP--MHHKPGEHMP---PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 252

Query: 879 --PPXXLPPPRXXXXXXXAXPPPP 944
             P   +PPP          PPPP
Sbjct: 253 HEPGEHMPPPPMHHEPGEHMPPPP 276


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = -1

Query: 944 GGGGXRXXXXXXXAGWGKXXGGXXGXXXXXXXXGPRGGGGGXXXAXSGKXGG 789
           G  G R        G+G   GG  G        G RGG GG      G  GG
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG-RGGRGGARGGRGGSSGG 63


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
 Frame = +3

Query: 663 SXPPPPXXXFFXXPPHYLXXKP---PPXPPXFFXY-SXXXGXPXXXPPPLSXXGXXXASP 830
           S P PP       PP     +P   PP P       S     P   PPP +       SP
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP-AQPAAPVKSP 184

Query: 831 PPXXXXXXXXXXXPPXPPXXLPPP 902
           P            PP PP   PPP
Sbjct: 185 PSAPSLPSAV---PPMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 823 PPPPPRGPXXXLXXXXPXXPPLXFPHPAXSXLXXXRXPPP 942
           PPPPPR          P       P P  S     R PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 19/81 (23%), Positives = 21/81 (25%)
 Frame = +3

Query: 702 PPHYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPPPXXXXXXXXXXXPPXP 881
           PP  +  +  P  P     S     P   PP L         P             PP P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 882 PXXLPPPRXXXXXXXAXPPPP 944
           P     P        A P PP
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPP 471


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 19/79 (24%), Positives = 21/79 (26%)
 Frame = +3

Query: 669 PPPPXXXFFXXPPHYLXXKPPPXPPXFFXYSXXXGXPXXXPPPLSXXGXXXASPPPXXXX 848
           PP         P  Y    PPP PP     +     P       S        PP     
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYS--SGRAVSPEIPPTYTPK 230

Query: 849 XXXXXXXPPXPPXXLPPPR 905
                  PP PP    PP+
Sbjct: 231 QADPLPAPPPPPPPTLPPQ 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,565
Number of Sequences: 5004
Number of extensions: 26932
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)